Infant Brain Atlas

 

Online Resources

This page contains resources related to our work on constructing surface-volume consistent atlases of the human brain during infancy

 

Linear Registration

Affine registration is performed using FSL FLIRT

fsl.fmrib.ox.ac.uk/fsl/fslwiki/FLIRT/UserGuide 


Cortical Surface Processing

Cortical features are measured via FreeSurfer

surfer.nmr.mgh.harvard.edu/ 


Cortical Surface Registration

Cortical surfaces are registered using Spherical Demons

sites.google.com/site/yeoyeo02/software/sphericaldemonsrelease 


Deformable Registration

Dynamic elasticity model based deformable registration is used for spatial normalization

github.com/saharahmad967/deformable-registration 


3D Image Visualization

ITK-SNAP is used for visualizing intensity images and tissue segmentation maps

www.itksnap.org/pmwiki/pmwiki.php 


Cortical Surface Visualization

Cortical surfaces and their features are visualized in ParaView

www.paraview.org/ 


Growth Modeling

Developmental trajectories of brain features are modeled using R

www.r-project.org/ 


Statistical Analysis

MATLAB is used for statistical analysis

www.mathworks.com/products/matlab.html  


 Longitudinal surface-volume brain atlases can be downloaded from Zenodo doi.org/10.5281/zenodo.7044932 

Questions?

Contact sahar967@email.unc.edu or ptyap@med.unc.edu to get more information on the project.